PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g18130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 256aa    MW: 29217.7 Da    PI: 9.9971
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g18130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.97.1e-42101443135
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg 88 
                      +k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGfdk+skt+eWLl+qak +ik+l++         s+ss sec   + +ss +     
  Vradi07g18130.1  10 TKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREknsvggakSASSTSEC---EGVSSLD----- 95 
                      79*************************************************************8888844333333444...5555555..... PP

              TCP  89 kaaksaakskksqksaasalnlak..esrakarararertrekmriknk 135
                      +   s  +++++++ ++ ++  +k   +r+kar+rarertrekmr++ +
  Vradi07g18130.1  96 EVVVSGVNEEHEKETPNMKRRTSKvcRKREKARERARERTREKMRTRRV 144
                      33333333333333333344444434789****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3910141IPR005333Transcription factor, TCP
PROSITE profilePS5136933.5211169IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.434121138IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDHTTRKRST KRDRHSKINT ARGLRDRRMR LSLEVAKRFF GLQDMLGFDK ASKTVEWLLN  60
QAKVEIKQLA REKNSVGGAK SASSTSECEG VSSLDEVVVS GVNEEHEKET PNMKRRTSKV  120
CRKREKARER ARERTREKMR TRRVLAADAS NLNRLSSWNP FETVEDSAAT QSQSVNHPSL  180
DAHLPETEEP SSHAKEHLGT VEDIARHEDN SLVIMNKWSP TMIFNSLNNS AILHEHQFAE  240
FQSLGKPWET YNDHI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508267.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A0L9TSH01e-175A0A0L9TSH0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7531e-175A0A0S3R753_PHAAN; Uncharacterized protein
STRINGGLYMA05G07943.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-27TCP domain protein 12